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Journal Article (47)
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2017Journal ArticleA new fate mapping system reveals context-dependent random or clonal expansion of microglia. Nature Neuroscience, pp. 793 - 803 (2017)
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2016Journal ArticleDNA Damage Signaling Instructs Polypoid Macrophage Fate in Granulomas. Cell 167, pp. 1264 - 1280 (2016)
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Journal ArticleA Single-Cell Transcriptome Atlas of the Human Pancreas. Cell Systems 3, pp. 385 - 394 (2016)
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Journal ArticleDe Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. Cell Stem Cell 19, pp. 266 - 277 (2016)
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Journal ArticleSpatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration. Developmental Cell 36, pp. 36 - 49 (2016)
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2015Journal ArticleSingle-cell mRNA sequencing reveales rare intestinal cell types. Nature 525, pp. 251 - 255 (2015)
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2014Journal ArticleValidation of noise models for single-cell transcriptomics enables genome-wiede quentification of stochastic gene expression. Nature methods 11, pp. 637 - 640 (2014)
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Journal ArticleConservation of mRNA and protein expression during development of C.elegans. Cell Reports 6, pp. 565 - 577 (2014)
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Journal ArticleGlobal characterization of the oocyte‐to‐embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO Journal 33, pp. 1751 - 1766 (2014)
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Journal ArticlePaternal RNA contributions of C.elegans zygote. EMBO Journal 33, pp. 1740 - 1750 (2014)
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2013Journal ArticleDampening of expression oscillation by synchronous regulation of a microRNA and its target. Nature Genetics 45, pp. 1337 - 1344 (2013)
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2012Journal ArticleMolecular determinants of pluripotency are deeply conserved between mammalian and planarian stem cells. EMBO Journal 31, pp. 2755 - 2769 (2012)
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2011Journal ArticleDe novo assembly and vailidation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Research 21, pp. 1193 - 1120 (2011)
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Journal ArticleIn vivo and treanscritopme-wide identification of RNA-binding protein target sites. Molecular Cell 44, pp. 828 - 840 (2011)
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2006Journal ArticleA genome-wide map of conserved microRNA targets in C.elegans. Current Biology 16, pp. 460 - 471 (2006)
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2005Journal ArticlemicroRNA target prediction across seven Drosophila species and comparison to mammalian targets. PLoS Computational Biology 1, p. e13 (2005)
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Journal ArticleCombinatorial microRNA target predictions. Nature Genetics 37, pp. 495 - 500 (2005)
Book Chapter (2)
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2019Book ChapterLineage Inference and Stem Cell Identity prediction Using Single-Cell RNA-Sequencing Data. In: Methods in Molecular Biology, pp. 227 - 301. Humana Press, Clifton, N.J. (2019)
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2008Book ChapterComputional prediction of microRNA targets in vertebrates, fruitflies and nematodes. In: MicroRNAs: From Basic Science to Disease Biology, pp. 172 - 186. Cambridge University Press (2008)
Working Paper (2)
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2019Working PaperBenchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects. (2019)
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2018Working PaperDeciphering the Regulatory Landscape of ɣδ T Cell Development by Single-Cell RNA Sequencing. BioRxiv (2018)