Publications

Komorowska, J. A.; Grammer, C.; Bălan, M.; Swann, J.: Ndrg3 is a critical regulator of peripheral T cell maturation and homeostasis. Science Advances 11 (2025)

Subramanian, S.; Phongbunchoo, Y.; Cauchy, P.; Ramamoorthy, S.: Comparative Profiling of Regulatory Modules as a Tool for Identifying the Transcription Factor Network Linked to Leukemogenesis. Springer Protocols 2909, pp. 179 - 209 (2025)

Grzejda, D.; Hess, A.; Rezansoff, A.; Gorey, S.; Carrasco, J.; Alfonso-Gonzalez, C.; Tsagkris, S.; Neuhaus, L.; Shi, M.; Ozbulut, H. C. et al.; Vögtle, F.-N.; Vlachos, A.; Hilgers, V.: Pumilio differentially binds to mRNA 3′ UTR isoforms to regulate localization of synaptic proteins. EMBO Reports (2025)

Patrick, E. M.; Yadav, R.; Senanayake, K.; Cotter, K.; Putnam, A. A.; Jankowsky, E.; Comstock, M. J.: High-resolution fleezers reveal duplex opening and stepwise assembly by an oligomer of the DEAD-box helicase Ded1p. Nature Communications 16, 1015 (2025)

Panzeri, I.; Fagnocchi, L.; Apostle, S.; Tompkins, M.; Wolfrum, E.; Madaj, Z.; Hostetter, G.; Liu, Y.; Schaefer, K.; Yang, C.-H. et al.; Bergsma, A.; Drougard, A.; Dror, E.; PERMUTE; Chandler, D. P.; Schramek, D.; Triche Jr, T. J.; Pospisilik, J. A.: TRIM28-dependent developmental heterogeneity determines cancer susceptibility through distinct epigenetic states. Nature cancer 6, pp. 385 - 403 (2025)

Saller, B. S.; Wöhrle, S.; Fischer, L.; Dufossez, C.; Ingerl, I. L.; Kessler, S.; Mateo-Tortola, M.; Gorka, O.; Lange, F.; Cheng, Y. et al.; Neuwirt, E.; Marada, A.; Koentges, C.; Urban, C.; Aktories, P.; Reuther, P.; Giese, S.; Kirschnek, S.; Mayer, C.; Pilic, J.; Falquez-Medina, H.; Oelgeklaus, A.; Deepagan, V. G.; Shojaee, F.; Zimmermann, J. A.; Weber, D.; Tai, Y.-H.; Crois, A.; Ciminski, K.; Peyronnet, R.; Brandenburg, K. S.; Wu, G.; Baumeister, R.; Heimbucher, T.; Rizzi, M.; Riedel, D.; Helmstädter, M.; Büscher, J. M.; Neumann, K.; Misgeld, T.; Kerschensteiner, M.; Walentek, P.; Kreutz, C.; Maurer, U.; Rambold, A.; Vince, J. E.; Edlich, F.; Malli, R.; Häcker, G.; Kierdorf, K.; Meisinger, C.; Köttgen, A.; Jakobs, S.; Weber, A. N. R.; Schwemmle, M.; Groß, C. J.; Groß, O.: Acute suppression of mitochondrial ATP production prevents apoptosis and provides an essential signal for NLRP3 inflammasome activation. Immunity 58, pp. 90 - 107 (2025)

Amann, L.; Fell, A.; Monaco, G.; Sankowski, R.; Wu, H. Z. Q.; Jordão, M. J. C.; Borst, K.; Fliegauf, M.; Masuda, T.; Ardura-Fabregat, A. et al.; Paterson, N.; Nent, E.; Cook, J.; Staszewski, O.; Mossad, O.; Falk, T.; Louveau, A.; Smirnov, I.; Kipnis, J.; Lämmermann, T.; Prinz, M.: Extrasinusoidal macrophages are a distinct subset of immunologically active dural macrophages. Science Immunology 9, eadh1129 (2024)

Lee, C.; Quintana, A.; Suppanz, I.; Gomez-Auli, A.; Mittler, G.; Cissé, I. I.: Light-induced targeting enables proteomics on endogenous condensates. Cell 187, pp. 7079 - 7090 (2024)

Bohnacker, S.; Henkel, F. D. R.; Hartung, F.; Geerlof, A.; Riemer, S.; Prodjinotho, U. F.; Salah, E. B.; Mourão, A. S. D.; Bohn, S.; Teder, T. et al.; Thomas, D.; Gurke, R.; Boeckel, C.; Ud-Dean, M.; König, A.-C.; Quaranta, A.; Alessandrini, F.; Lechner, A.; Spitzlberger, B.; Kabat, A. M.; Pearce, E. J.; Haeggström, J. Z.; Hauck, S. M.; Wheelock, C. E.; Jakobsson, P.-J.; Sattler, M.; Voehringer, D.; Feige, M. J.; da Costa, C. P.; Bieren, J. E.-v.: A helminth enzyme subverts macrophage-mediated immunity by epigenetic targeting of prostaglandin synthesis. Science Immunology 9, eadl1467 (2024)

Drougard, A.; Ma, E. H.; Wegert, V.; Sheldon, R.; Panzeri, I.; Vatsa, N.; Apostle, S.; Fagnocchi, L.; Schaf, J.; Gossens, K. et al.; Völker, J.; Pang, S.; Bremser, A.; Dror, E.; Giacona, F.; Sagar, S.; Henderson, M. X.; Prinz, M.; Jones, R. G.; Pospisilik, J. A.: An acute microglial metabolic response controls metabolism and improves memory. eLife 12, RP87120 (2024)

Usher, E. T.; Fossat, M. J.; Holehouse, A. S.: Phosphorylation of disordered proteins tunes local and global intramolecular interactions. Biophysical Journal 123, pp. 4082 - 4096 (2024)

Giorgetti, O. B.; Haas-Assenbaum, A.; Boehm, T.: Probing TCR Specificity Using Artificial In Vivo Diversification of CDR3 Regions. European Journal of Immunology 55, e202451434 (2024)

Greiner-Tollersrud, O. K.; Krausz, M.; Boehler, V.; Polyzou, A.; Seidl, M.; Spahiu, A.; Abdullah, Z.; Andryka-Cegielski, K.; Dominick, F. I.; Huebscher, K. et al.; Goschin, A.; Smulski, C. R.; Trompouki, E.; Link, R.; Ebersbach, H.; Srinivas, H.; Marchant, M.; Sogkas, G.; Staab, D.; Vågbø, C.; Guerini, D.; Baasch, S.; Latz, E.; Hartmann, G.; Henneke, P.; Geiger, R.; Peng, X. P.; Grimbacher, B.; Bartok, E.; Alseth, I.; Warncke, M.; Proietti, M.: ADA2 is a lysosomal deoxyadenosine deaminase acting on DNA involved in regulating TLR9-mediated immune sensing of DNA. Cell Reports 43, 114899 (2024)

de Brito, T. F.; Cardoso, M. A.; Atinbayeva, N.; de Brito, I. A. A.; da Costa, L. A.; Iovino, N.; Pane, A.: Embryonic piRNAs target horizontally transferred vertebrate transposons in assassin bugs. Frontiers in Cell and Developmental Biology 12 (2024)

Ell, C.-M.; Abu, S.; Chayengia, M.; Kustermann, M. M. M.; Lorenz, J.; Schächtle, M.; Pyrowolakis, G.: A genome-engineered tool set for Drosophila TGF-β/BMP signaling studies. Development 151, dev204222 (2024)

Boneva, S. K.; Wolf, J.; Jung, M.; Prinz, G.; Chui, T. Y. P.; Jauch, J.; Drougard, A.; Pospisilik, J. A.; Schlecht, A.; Bucher, F. et al.; Rosen, R. B.; Agostini, H.; Schlunck, G.; Lange, C. A. K.: The multifaceted role of vitreous hyalocytes: Orchestrating inflammation, angiomodulation and erythrophagocytosis in proliferative diabetic retinopathy. Journal of Neuroinflammation 21, 297 (2024)

Luo, F.; Sui, L.; Sun, Y.; Lai, Z.; Zhang, C.; Zhang, G.; Bi, B.; Yu, S.; Jin, L. H.: Rab1 and Syntaxin 17 regulate hematopoietic homeostasis through β-integrin trafficking in Drosophila. Journal of Genetics and Genomics 52, pp. 51 - 65 (2024)

Boumpas, A.; Papaioannou, A. S.; Bousounis, P.; Grigoriou, M.; Bergo, V.; Papafragkos, I.; Tasis, A.; Iskas, M.; Boon, L.; Makridakis, M. et al.; Vlachou, A.; Gavriilaki, E.; Hatzioannou, A.; Mitroulis, I.; Trompouki, E.; Verginis, P.: PD-L1 blockade immunotherapy rewires cancer-induced emergency myelopoiesis. Frontiers in Immunology 15, 1386838 (2024)

Pirola, C. J.; Landa, M. S.; Schuman, M.; García, S. I.; Salatino, A.; Sookoian, S.: Metabolic dysfunction-associated steatotic liver disease exhibits sex-specific microbial heterogeneity within intestinal compartments. Clinical and molecular hepatology: CMH / Korean Association for the Study of the Liver 31, pp. 179 - 195 (2024)

Boehm, T.: Understanding vertebrate immunity through comparative immunology. Nature Reviews Immunology 25, pp. 141 - 152 (2024)

Ciabrelli, F.; Atinbayeva, N.; Pane, A.; Iovino, N.: Epigenetic inheritance and gene expression regulation in early Drosophila embryos. EMBO Reports 25, pp. 4131 - 4152 (2024)

Wogram, E.; Sümpelmann, F.; Dong, W.; Rawat, E.; Maestre, I. F.; Fu, D.; Braswell, B.; Khalil, A.; Büscher, J. M.; Mittler, G. et al.; Borner, G. H. H.; Vlachos, A.; Tholen, S.; Schilling, O.; Bell, G. W.; Rambold, A.; Akhtar, A.; Schnell, O.; Beck, J.; Abu-Reh, M.; Prinz, M.; Jaenisch, R.: Rapid phagosome isolation enables unbiased multiomic analysis of human microglial phagosomes. Immunity 57, pp. 2216 - 2231 (2024)

Maldonado-Bonilla, L. D.; Caballero-Pérez, J.; Ángeles-Argáiz, R. E.: The complete mitochondrial genome of the banana pathogen Fusarium oxysporum f. sp. cubense M5. Microbiology Resource Announcements 13, e00421-24 (2024)

Chen, H.-R.; Sun, Y.; Mittler, G.; Rumpf, T.; Shvedunova, M.; Grosschedl, R.; Akhtar, A.: MOF-mediated PRDX1 acetylation regulates inflammatory macrophage activation. Cell Reports 43, 114682 (2024)

Mihlan, M.; Wissmann, S.; Gavrilov, A.; Kaltenbach, L.; Britz, M.; Franke, K.; Hummel, B.; Imle, A.; Suzuki, R.; Stecher, M. et al.; Glaser, K. M.; Lorentz, A.; Carmeliet, P.; Yokomizo, T.; Hilgendorf, I.; Sawarkar, R.; Diz-Muñoz, A.; Büscher, J. M.; Mittler, G.; Maurer, M.; Krause, K.; Babina, M.; Erpenbeck, L.; Frank, M.; Rambold, A.; Lämmermann, T.: Neutrophil trapping and nexocytosis, mast cell-mediated processes for inflammatory signal relay. Cell 187, pp. 5316 - 5335 (2024)

Charlton, S. J.; Flury, V.; Kanoh, Y.; Genzor, A. V.; Kollenstart, L.; Ao, W.; Brøgger, P.; Weisser, M. B.; Adamus, M.; Alcaraz, N. et al.; de Fenffe, C. M. D.; Mattiroli, F.; Montoya, G.; Masai, H.; Groth, A.; Thon, G.: The fork protection complex promotes parental histone recycling and epigenetic memory. Cell 187, pp. 5029 - 5047 (2024)

Ozbulut, H. C.; Hilgers, V.: Neuronal RNA processing: cross-talk between transcriptional regulation and RNA-binding proteins. Frontiers in Molecular Neuroscience 17 (2024)

Phongbunchoo, Y.; Braikia, F.-Z.; Pessoa-Rodrigues, C.; Ramamoorthy, S.; Ramachandran, H.; Grosschedl, A.; Ma, F.; Cauchy, P.; Akhtar, A.; Sen, R. et al.; Mittler, G.; Grosschedl, R.: YY1-mediated enhancer-promoter communication in the immunoglobulin μ locus is regulated by MSL/MOF recruitment. Cell Reports 43, 114456 (2024)

Grammer, C.; Komorowska, J. A.; Swann, J.: Vhl safeguards thymic epithelial cell identity and thymopoietic capacity by constraining Hif1a activity during development. iScience 27, 110258 (2024)

Zimmermann, J. A.; Lucht, K.; Stecher, M.; Badhan, C.; Glaser, K. M.; Epple, M. W.; Koch, L. R.; Deboutte, W.; Manke, T.; Ebnet, K. et al.; Brinkmann, F.; Fehler, O.; Vogl, T.; Schuster, E.-M.; Bremser, A.; Büscher, J. M.; Rambold, A.: Functional multi-organelle units control inflammatory lipid metabolism of macrophages. Nature Cell Biology 26, pp. 1261 - 1273 (2024)