Search results

Journal Article (47)

  1. 2017
    Journal Article
    Tay, T. L.; Mai, D.; Dautzenberg, J.; Fernández-Klett, F.; Lin, G.; Sagar, S.; Datta, M.; Drougard, A.; Stempfl, T.; Ardura-Fabregat, A. et al.; Staszewski, O.; Margineanu, A.; Sporbert, A.; Steinmetz, L. M.; Pospisilik, J. A.; Jung, S.; Priller, J.; Grün, D.; Ronneberger, O.; Prinz, M.: A new fate mapping system reveals context-dependent random or clonal expansion of microglia. Nature Neuroscience, pp. 793 - 803 (2017)
  2. 2016
    Journal Article
    Herrtwich, L.; Nanda, I.; Evangelou, K.; Nikolova, T.; Horn, V.; Sagar, S.; Erny, D.; Stefanowski, J.; Rogell, L.; Klein, C. et al.; Gharun, K.; Follo, M.; Seidl, M.; Kremer, B.; Münke, N.; Senges, J.; Fliegauf, M.; Aschman, T.; Pfeifer, D.; Sarrazin, S.; Sieweke, M. H.; Wagner, D.; Dierks, C.; Haaf, T.; Ness, T.; Zaiss, M. M.; Voll, R. E.; Deshmukh, S. D.; Prinz, M.; Goldmann, T.; Hölscher, C.; Hauser, A. E.; Lopez-Contreras, A. J.; Grün, D.; Gorgoulis, V.; Diefenbach, A.; Henneke, P.; Triantafyllopoulou, A.: DNA Damage Signaling Instructs Polypoid Macrophage Fate in Granulomas. Cell 167, pp. 1264 - 1280 (2016)
  3. Journal Article
    Muraro, M. J.; Dharmadhikari, G.; Grün, D.; Groen, N.; Dielen, T.; Jansen, E.; van Gurp, L.; Engelse, M. A.; Carlotti, F.; de Koning, E. J.P. et al.; van Oudenaarden, A.: A Single-Cell Transcriptome Atlas of the Human Pancreas. Cell Systems 3, pp. 385 - 394 (2016)
  4. Journal Article
    Grün, D.; Muraro, M. J.; Boisset, J.-C.; Wiebrands, K.; Lyubimova, A.; Dharmadhikari, G.; van den Born, M.; Jansen, E.; Clevers, H.; de Koning, E. J.P. et al.; van Oudenaarden, A.: De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. Cell Stem Cell 19, pp. 266 - 277 (2016)
  5. Journal Article
    Wu, C.-C.; Kruse, F.; Vasudevarao, M. D.; Junker, J. P.; Zebrowski, D. C.; Fischer, K.; Noël, E. S.; Grün, D.; Berezikov, E.; Engel, F. B. et al.; van Oudenaarden, A.; Weidinger, G.; Bakkers, J.: Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration. Developmental Cell 36, pp. 36 - 49 (2016)
  6. 2015
    Journal Article
    Grün, D.; Lyubimova, A.; Kester, L.; Wiebrands, K.; Basak, O.; Sasaki, N.; Clevers, H.; van Oudenaarden, A.: Single-cell mRNA sequencing reveales rare intestinal cell types. Nature 525, pp. 251 - 255 (2015)
  7. 2014
    Journal Article
    Grün, D.; Kester, L.; van Oudenaarden, &. A.: Validation of noise models for single-cell transcriptomics enables genome-wiede quentification of stochastic gene expression. Nature methods 11, pp. 637 - 640 (2014)
  8. Journal Article
    Grün, D.; Kirchner, M.; Thierfelder, N.; Stoeckius, M.; Selbach, M.; Rajewsky, N.: Conservation of mRNA and protein expression during development of C.elegans. Cell Reports 6, pp. 565 - 577 (2014)
  9. Journal Article
    Stoeckius, M.; Grün, D.; Kirchner, M.; Ayoub, S.; Torti, F.; Piano, F.; Herzog, M.; Selbach, M.; Rajewsky, N.: Global characterization of the oocyte‐to‐embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO Journal 33, pp. 1751 - 1766 (2014)
  10. Journal Article
    Stoeckius, M.; Grün, D.; Rajewsky, N.: Paternal RNA contributions of C.elegans zygote. EMBO Journal 33, pp. 1740 - 1750 (2014)
  11. 2013
    Journal Article
    Kim, D. h.; Grün, D.; van Oudenaarden, A.: Dampening of expression oscillation by synchronous regulation of a microRNA and its target. Nature Genetics 45, pp. 1337 - 1344 (2013)
  12. 2012
    Journal Article
    Önal, P.; Grün, D.; Adamidi, C.; Rybak, A.; Solana, J.; Mastrobuoni, G.; Wang, Y.; Rahn, H.; Chen, W.; Kempa, S. et al.; Ziebold, U.; Rajewsky, N.: Molecular determinants of pluripotency are deeply conserved between mammalian and planarian stem cells. EMBO Journal 31, pp. 2755 - 2769 (2012)
  13. 2011
    Journal Article
    Adamidi, C.; Wang, Y.; Grün, D.; Mastrobuoni, G.; You, X.; Tolle, D.; Dodt, M.; Mackowiak, S. D.; Gogol-Doering, A.; Oenal, P. et al.; Rybak, A.; Ross, E.; Alvarado, A. S.; Kempa, S.; Dieterich, C.; Rajewsky, N.; Chen, W.: De novo assembly and vailidation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Research 21, pp. 1193 - 1120 (2011)
  14. Journal Article
    Jungkamp, A.-C.; Stoeckius, M.; Mecenas, D.; Grün, D.; Mastrobuoni, G.; Kempa, S.; Rajewsky, N.: In vivo and treanscritopme-wide identification of RNA-binding protein target sites. Molecular Cell 44, pp. 828 - 840 (2011)
  15. 2006
    Journal Article
    Lall, S.; Grün, D.; Krek, A.; Chen, K.; Wang, Y.-L.; Dewey, C. N.; Sood, P.; Colombo, T.; Bray, N.; MacMenamin, P. et al.; Kao, H.-L.; Gunsalus, K. C.; Pachter, L.; Piano, F.; Rajewsky, N.: A genome-wide map of conserved microRNA targets in C.elegans. Current Biology 16, pp. 460 - 471 (2006)
  16. 2005
    Journal Article
    Grün, D.; Wang, Y.-L.; Langenberger, D.; Gunsalus, K. C.; Rajewsky, N.: microRNA target prediction across seven Drosophila species and comparison to mammalian targets. PLoS Computational Biology 1, p. e13 (2005)
  17. Journal Article
    Krek, A.; Grün, D.; Poy, M. N.; Wolf, R.; Rosenberg, L.; Epstein, E. J.; MacMenamin, P.; da Piedade, I.; Gunsalus, K. C.; &, M. S. et al.; Rajewsky, N.: Combinatorial microRNA target predictions. Nature Genetics 37, pp. 495 - 500 (2005)

Book Chapter (2)

  1. 2019
    Book Chapter
    Sagar, S.; Grün, D.: Lineage Inference and Stem Cell Identity prediction Using Single-Cell RNA-Sequencing Data. In: Methods in Molecular Biology, pp. 227 - 301. Humana Press, Clifton, N.J. (2019)
  2. 2008
    Book Chapter
    Grün, D.; Rajewsky, N.: Computional prediction of microRNA targets in vertebrates, fruitflies and nematodes. In: MicroRNAs: From Basic Science to Disease Biology, pp. 172 - 186. Cambridge University Press (2008)

Working Paper (2)

  1. 2019
    Working Paper
    Mereu, E.; Lafzi, A.; Moutinho, C.; Ziegenhain, C.; MacCarthy, D. J.; Alvarez, A.; Batlle, E.; Sagar, S.; Grün, D.; Lau, J. K. et al.; Boutet, S. C.; Sanada, C.; Ooi, A.; Jones, R. C.; Kaihara, K.; Brampton, C.; Talaga, Y.; Sasagawa, Y.; Tanaka, K.; Hayashi, T.; Nikaido, I.; Fischer, C.; Sauer, S.; Trefzer, T.; Conrad, C.; Adiconis, X.; Nguyen, L. T.; Regev, A.; Levin, J. Z.; Parekh, S.; Janjic, A.; Wange, L. E.; Bagnoli, J. W.; Enard, W.; Gut, M.; Sandberg, R.; Gut, I.; Stegle, O.; Heyn, H.: Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects. (2019)
  2. 2018
    Working Paper
    Sagar, S.; Pokrovskil, M.; Herman, J. S.; Naik, S.; Sock, E.; Lausch, U.; Wegner, M.; Tanriver, Y.; Littman, D. R.; Grün, D.: Deciphering the Regulatory Landscape of ɣδ T Cell Development by Single-Cell RNA Sequencing. BioRxiv (2018)
 
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