Journal Article (51)

2024
Journal Article
Alfonso-Gonzalez, C.; Hilgers, V.: (Alternative) transcription start sites as regulators of RNA processing. Trends in Cell Biology 34, pp. 1018 - 1028 (2024)
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Maler, M. D.; Zwick, S.; Kallfass, C.; Engelhard, P.; Shi, H.; Hellig, L.; Zhengyang, P.; Hardt, A.; Zissel, G.; Ruzsics, Z. et al.; Jahnen-Dechent, W.; Martin, S. F.; Nielsen, P. J.; Stolz, D.; Lopatecka, J.; Bastyans, S.; Beutler, B.; Schamel, W. W.; Fejer, G.; Freudenberg, M.: Type I Interferon, Induced by Adenovirus or Adenoviral Vector Infection, Regulates the Cytokine Response to Lipopolysaccharide in a Macrophage Type-Specific Manner. Journal of Innate Immunity 16, pp. 226 - 247 (2024)
Journal Article
Beckmann, C. C. A.; Ramamoorthy, S.; Trompouki, E.; Driever, W.; Schwarz-Furlan, S.; Strahm, B.; Yoshimi, A.; Niemeyer, C. M.; Erlacher, M.; Kapp, F. G.: Assessment of a novel NRAS in-frame tandem duplication causing a myelodysplastic/myeloproliferative neoplasm. Experimental Hematology 133, 104207 (2024)
Journal Article
Fischer, F.; Ernst, L.; Frey, A.; Holstein, K.; Prasad, D.; Weichselberger, V.; Balaji, R.; Classen, A.-K.: A mismatch in the expression of cell surface molecules induces tissue-intrinsic defense against aberrant cells. Current Biology 34, pp. 980 - 996 (2024)
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Flury, V.; Groth, A.: Safeguarding the epigenome through the cell cycle: a multitasking game. Current Opinion in Genetics & Development 85, 102161 (2024)
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Pirola, C. J.; Salatino, A.; Gianotti, T. F.; Castaño, G. O.; Garaycoechea, M.; Sookoian, S.: Cross talk between the liver microbiome and epigenome in patients with metabolic dysfunction-associated steatotic liver disease. EBioMedicine 101, 104996 (2024)
Journal Article
Glaser, K. M.; Egg, M.; Hobitz, S.; Mitterer, M.; Schain-Zota, D.; Schönberger, K.; Schuldes, K.; Cabezas-Wallscheid, N.; Lämmermann, T.; Rambold, A. et al.; Büscher, J. M.: Targeted Metabolomics on Rare Primary Cells. Journal of Visualized Experiments 204, e65690 (2024)
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Czech, M.; Schneider, S.; Peltokangas, N.; Khawanky, N. E.; Ghimire, S.; Andrieux, G.; Hülsdünker, J.; Krausz, M.; Proietti, M.; Braun, L. M. et al.; Rückert, T.; Langenbach, M.; Schmidt, D.; Martin, I.; Wenger, V.; de Vega, E.; Haring, E.; Pourjam, M.; Pfeifer, D.; Schmitt-Graeff, A.; Grimbacher, B.; Aumann, K.; Kircher, B.; Tilg, H.; Raffatellu, M.; Orberg, E. T.; Häcker, G.; Duyster, J.; Köhler, N.; Holler, E.; Nachbaur, D.; Boerries, M.; Gerner, R. R.; Grün, D.; Zeiser, R.: Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease. Science translational medicine: integrating medicine and science / American Association for the Advancement of Science 16, eadi1501 (2024)
Journal Article
Balachandran, S.; Prada-Medina, C. A.; Mensah, M. A.; Glaser, J.; Kakar, N.; Nagel, I.; Pozojevic, J.; Audain, E.; Hitz, M.-P.; Kircher, M. et al.; Sreenivasan, V. K.A.; Spielmann, M.: STIGMA: Single-cell tissue-specific gene prioritization using machine learning. The American Journal of Human Genetics 111, pp. 338 - 349 (2024)
Journal Article
Schaffer, A.-M.; Fiala, G. J.; Hils, M.; Natali, E.; Babrak, L.; Herr, L. A.; Romero-Mulero, M. C.; Cabezas-Wallscheid, N.; Rizzi, M.; Miho, E. et al.; Schamel, W. W. A.; Minguet, S.: Kidins220 regulates the development of B cells bearing the λ light chain. eLife 13, e83943 (2024)
Journal Article
Simon, N.; Safyan, A.; Pyrowolakis, G.; Matsuda, S.: Dally is not essential for Dpp spreading or internalization but for Dpp stability by antagonizing Tkv-mediated Dpp internalization. eLife 12, RP86663 (2024)
Journal Article
Leone, S.; Srivastava, A.; Herrero-Ruiz, A.; Hummel, B.; Tittel, L.; Campalastri, R.; Aprile-Garcia, F.; Tan, J. H.; Rawat, P.; Andersson, P. et al.; Willis, A. E.; Sawarkar, R.: HSP70 binds to specific non-coding RNA and regulates human RNA polymerase III. Molecular Cell 84, pp. 687 - 701 (2024)
Journal Article
Glaser, K. M.; Doon-Ralls, J.; Walters, N.; Rima, X. Y.; Rambold, A.; Réategui, E.; Lämmermann, T.: Arp2/3 complex and the pentose phosphate pathway regulate late phases of neutrophil swarming. iScience 27, 108656 (2024)
Journal Article
Zolotarev, N.; Wang, Y.; Du, M.; Bayer, M.; Grosschedl, A.; Cissé, I. I.; Grosschedl, R.: Regularly spaced tyrosines in EBF1 mediate BRG1 recruitment and formation of nuclear subdiffractive clusters. Genes and Development 38, pp. 4 - 10 (2024)
Journal Article
Applewhite, D. A.; Bhalla, N.; Cabezas-Wallscheid, N.; Erez, N.; Li, M.; Polo, J. M.; Taguchi, T.; Thiam, A. R.; Wang, X.: Mentoring the next generation of cell biologists. Nature Cell Biology 26, pp. 15 - 18 (2024)
Journal Article
Villa, M.; Sanin, D. E.; Apostolova, P.; Corrado, M.; Kabat, A. M.; Cristinzio, C.; Regina, A.; Carrizo, G. E.; Rana, N.; Stanczak, M. A. et al.; Baixauli, F.; Grzes, K. M.; Cupovic, J.; Solagna, F.; Hackl, A.; Globig, A.-M.; Hässler, F.; Puleston, D. J.; Kelly, B.; Cabezas-Wallscheid, N.; Hasselblatt, P.; Bengsch, B.; Zeiser, R.; Sagar; Büscher, J. M.; Pearce, E. J.; Pearce, E. L.: Prostaglandin E2 controls the metabolic adaptation of T cells to the intestinal microenvironment. Nature Communications 15, 451 (2024)
Journal Article
Torcellan, T.; Friedrich, C.; Doucet-Ladevèze, R.; Ossner, T.; Solé, V. V.; Riedmann, S.; Ugur, M.; Imdahl, F.; Rosshart, S. P.; Arnold, S. J. et al.; de Agüero, M. G.; Gagliani, N.; Flavell, R. A.; Backes, S.; Kastenmüller, W.; Gasteiger, G.: Circulating NK cells establish tissue residency upon acute infection of skin and mediate accelerated effector responses to secondary infection. Immunity 57, pp. 124 - 140 (2024)
Journal Article
Du, M.; Stitzinger, S. H.; Spille, J.-H.; Cho, W.-K.; Lee, C.; Hijaz, M.; Quintana, A.; Cissé, I. I.: Direct observation of a condensate effect on super-enhancer controlled gene bursting. Cell 187, pp. 331 - 344 (2024)
Journal Article
Lawir, D.-F.; Soza-Ried, C.; Iwanami, N.; Siamishi, I.; Bylund, G. O.; O'Meara, C.; Sikora, K.; Kanzler, B.; Johansson, E.; Schorpp, M. et al.; Cauchy, P.; Boehm, T.: Antagonistic interactions safeguard mitotic propagation of genetic and epigenetic information in zebrafish. Communications Biology 7, 31 (2024)
Journal Article
du Halgouet, A.; Bruder, K.; Peltokangas, N.; Darbois, A.; Obwegs, D.; Salou, M.; Thimme, R.; Hofmann, M.; Lantz, O.; Sagar: Multimodal profiling reveals site-specific adaptation and tissue residency hallmarks of γδ T cells across organs in mice. Nature Immunology 25, pp. 343 - 356 (2024)
Journal Article
Park, A. Y.; Leney-Greene, M.; Lynberg, M.; Gabrielski, J. Q.; Xu, X.; Schwarz, B.; Zheng, L.; Balasubramaniyam, A.; Ham, H.; Chao, B. et al.; Zhang, Y.; Matthews, H. F.; Cui, J.; Yao, Y.; Kubo, S.; Chanchu, J. M.; Morawski, A. R.; Cook, S. A.; Jiang, P.; Ravell, J. C.; Cheng, Y. H.; George, A.; Faruqi, A.; Pagalilauan, A. M.; Bergerson, J. R. E.; Ganesan, S.; Chauvin, S. D.; Aluri, J.; Edwards-Hicks, J.; Bohrnsen, E.; Tippett, C.; Omar, H.; Xu, L.; Butcher, G. W.; Pascall, J.; Karakoc-Aydiner, E.; Kiykim, A.; Maecker, H.; Tezcan, İ.; Esenboga, S.; Heredia, R. J.; Akata, D.; Tekin, S.; Kara, A.; Kuloglu, Z.; Unal, E.; Kendirli, T.; Dogu, F.; Karabiber, E.; Atkinson, T. P.; Cochet, C.; Filhol, O.; Bosio, C. M.; Davis, M. M.; Lifton, R. P.; Pearce, E. L.; Daumke, O.; Aytekin, C.; Şahin, G. E.; Aksu, A. Ü.; Uzel, G.; Rao, V. K.; Sari, S.; Boztug, K.; Cagdas, D.; Haskologlu, S.; Ikinciogullari, A.; Schwefel, D.; Vilarinho, S.; Baris, S.; Ozen, A.; Su, H. C.; Lenardo, M. J.: GIMAP5 deficiency reveals a mammalian ceramide-driven longevity assurance pathway. Nature Immunology 25, pp. 282 - 293 (2024)

Manuscript (1)

2024
Manuscript
Hohl, T.; Bönisch, U.; Manke, T.; Arrigoni, L.: Enhancing single-cell ATAC sequencing with formaldehyde fixation, cryopreservation, and multiplexing for flexible analysis. bioRxiv: the preprint server for biology (2024)

Preprint (3)

2024
Preprint
José, C. S.; Ferreira, M.; Cordova, L.; Pedro, A.; Senz, J.; Garcia-Pelaez, J.; Lobo, S.; Gullo, I.; André, A.; Kaurah, P. et al.; Puntieri, F.; Glaser, J.; Huntsman, D.; Mundlos, S.; Schrader, K.; Oliveira, C.: Combined analysis of chromatin accessibility, promoter interactions and whole genome sequencing solved the missing heritability in gastric cancer. medRxiv: the preprint server for health sciences (2024)
Preprint
Schindler, M.; Feregrino, C.; Aldrovandi, S.; Lo, B.-W.; Monaco, A. A.; Ringel, A. R.; Morales, A.; Zehnder, T.; Behncke, R. Y.; Glaser, J. et al.; Barclay, A.; Andrey, G.; Kragesteen, B. K.; Hägerling, R.; Haas, S.; Vingron, M.; Ulitsky, I.; Marti-Renom, M.; Hechavarria, J.; Fasel, P.; Hiller, M.; Lupiáñez, D.; Mundlos, S.; Real, F. M.: Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development. bioRxiv: the preprint server for biology (2024)
Preprint
Glaser, J.; Cova, G.; Fauler, B.; Prada-Medina, C. A.; Stanislas, V.; Phan, M. H.Q.; Schöpflin, R.; Aktas, Y.; Franke, M.; Andrey, G. et al.; Paliou, C.; Laupert, V.; Chan, W.-L.; Wittler, L.; Mielke, T.; Mundlos, S.: Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes. bioRxiv: the preprint server for biology (2024)
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