Publications

Boehm, T.: The chilling origin of germinal centers. Science Immunology 8, eadl1470 (2023)

Altas, B.; Rhee, H.-J.; Ju, A.; Solís, H. C.; Karaca, S.; Winchenbach, J.; Kaplan-Arabaci, O.; Schwark, M.; Ambrozkiewicz, M. C.; Lee, C. et al.; Spieth, L.; Wieser, G. L.; Chaugule, V. K.; Majoul, I.; Hassan, M. A.; Goel, R.; Wojcik, S. M.; Koganezawa, N.; Hanamura, K.; Rotin, D.; Pichler, A.; Mitkovski, M.; de Hoz, L.; Poulopoulos, A.; Urlaub, H.; Jahn, O.; Saher, G.; Brose, N.; Rhee, J.; Kawabe, H.: Nedd4-2-dependent regulation of astrocytic Kir4.1 and Connexin43 controls neuronal network activity. Journal of Cell Biology 223, e201902050 (2023)

Sun, Y.; Wiese, M.; Hmadi, R.; Karayol, R.; Seyfferth, J.; Greene, J. A. M.; Erdogdu, N. U.; Deboutte, W.; Arrigoni, L.; Holz, H. et al.; Renschler, G.; Hirsch, N.; Foertsch, A.; Basilicata, M. F.; Stehle, T.; Shvedunova, M.; Bella, C.; Rodrigues, C. P.; Schwalb, B.; Cramer, P.; Manke, T.; Akhtar, A.: MSL2 ensures biallelic gene expression in mammals. Nature (2023)

Zhang, Y. W.; Schönberger, K.; Cabezas-Wallscheid, N.: Bidirectional interplay between metabolism and epigenetics in hematopoietic stem cells and leukemia. The EMBO Journal, e112348 (2023)

Cosenza-Contreras, M.; Schäfer, A.; Sing, J.; Cook, L.; Stillger, M. N.; Chen, C.-Y.; Hidalgo, J. V.; Pinter, N.; Meyer, L.; Werner, T. et al.; Bug, D.; Haberl, Z.; Kübeck, O.; Zhao, K.; Stei, S.; Gafencu, A. V.; Ionita, R.; Brehar, F. M.; Ferrer-Lozano, J.; Ribas, G.; Cerdá-Alberich, L.; Martí-Bonmatí, L.; Nimsky, C.; Straaten, A. V.; Biniossek, M. L.; Föll, M.; Cabezas-Wallscheid, N.; Büscher, J. M.; Röst, H.; Arnoux, A.; Bartsch, J. W.; Schilling, O.: Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism. Neuro-Oncology: official journal of the World Federation of Neuro-Oncology, noad208 (2023)

Guhathakurta, S.; Erdogdu, N. U.; Hoffmann, J. J.; Grzadzielewska, I.; Schendzielorz, A.; Seyfferth, J.; Mårtensson, C. U.; Corrado, M.; Karoutas, A.; Warscheid, B. et al.; Pfanner, N.; Becker, T.; Akhtar, A.: COX17 acetylation via MOF-KANSL complex promotes mitochondrial integrity and function. Nature Metabolism (2023)

Schönberger, K.; Cabezas-Wallscheid, N.: How Nutrition Regulates Hematopoietic Stem Cell Features. Experimental Hematology (2023)

Penndorf, P.; Jabs, J.: A new approach to making scientific research more efficient - rethinking sustainability. FEBS Letters 597, pp. 2371 - 2374 (2023)

Alfonso-Gonzalez, C.; Arrigoni, L.; Ozbulut, H. C.; Falk, S.; Bönisch, U.; Hilgers, V.: Identification of regulatory links between transcription and RNA processing with long-read sequencing. STAR Protocols 4, 102505 (2023)

Van Emmenis, L.: Nina Cabezas Wallscheid: Enjoying the freedom to decide my research path. Journal of experimental medicine: JEM 220, e20231561 (2023)

Pérez-Mojica, J. E.; Enders, L.; Lau, K. H.; Lempradl, A.: Single-embryo RNA sequencing for continuous and sex-specific gene expression analysis on Drosophila. STAR Protocols 4, 102535 (2023)

Schmied, C.; Nelson, M. S.; Avilov, S.; Bakker, G.-J.; Bertocchi, C.; Bischof, J.; Boehm, U.; Brocher, J.; Carvalho, M. T.; Chiritescu, C. et al.; Christopher, J.; Cimini, B. A.; Conde-Sousa, E.; Ebner, M.; Ecker, R.; Eliceiri, K.; Fernandez-Rodriguez, J.; Gaudreault, N.; Gelman, L.; Grunwald, D.; Gu, T.; Halidi, N.; Hammer, M.; Hartley, M.; Held, M.; Jug, F.; Kapoor, V.; Koksoy, A. A.; Lacoste, J.; Le Dévédec, S.; Le Guyader, S.; Liu, P.; Martins, G. G.; Mathur, A.; Miura, K.; Llopis, P. M.; Nitschke, R.; North, A.; Parslow, A. C.; Payne-Dwyer, A.; Plantard, L.; Ali, R.; Schroth-Diez, B.; Schütz, L.; Scott, R. T.; Seitz, A.; Selchow, O.; Sharma, V. P.; Spitaler, M.; Srinivasan, S.; Strambio-De-Castillia, C.; Taatjes, D.; Tischer, C.; Jambor, H. K.: Community-developed checklists for publishing images and image analyses. Nature Methods (2023)

Vaikunthanathan, T.; Landmann, E.; Correa, D. M.; Romano, M.; Trevelin, S. C.; Peng, Q.; Crespo, E.; Corrado, M.; Lozano, J.-J.; Pearce, E. L. et al.; Perpinan, E.; Zoccarato, A.; Siew, L.; Edwards-Hicks, J.; Khan, R.; Luu, N.-T.; Thursz, M. R.; Newsome, P. N.; Martinez-Llordella, M.; Shah, N.; Lechler, R. I.; Shah, A. M.; Sanchez-Fueyo, A.; Lombardi, G.; Safinia, N.: Dysregulated anti-oxidant signalling and compromised mitochondrial integrity negatively influence regulatory T cell function and viability in liver disease. EBioMedicine 95, 104778 (2023)

Grigorash, B. B.; van Essen, D.; Liang, G.; Grosse, L.; Emelyanov, A.; Kang, Z.; Korablev, A.; Kanzler, B.; Molina, C.; Lopez, E. et al.; Demidov, O. N.; Garrido, C.; Liu, F.; Saccani, S.; Bulavin, D. V.: p16^High senescence restricts cellular plasticity during somatic cell reprogramming. Nature Cell Biology 25, pp. 1265 - 1278 (2023)

Das, S.; Boehm, T.; Holland, S. J.; Rast, J. P.; Fontenla-Iglesias, F.; Morimoto, R.; Valadez, J. G.; Heimroth, R. D.; Hirano, M.; Cooper, M. D.: Evolution of two distinct variable lymphocyte receptors in lampreys: VLRD and VLRE. Cell Reports 42, 112933 (2023)

Zhang, Y. W.; Velasco-Hernandez, T.; Mess, J.; Lalioti, M.-E.; Romero-Mulero, M. C.; Obier, N.; Karantzelis, N.; Rettkowski, J.; Schönberger, K.; Karabacz, N. et al.; Jäcklein, K.; Morishima, T.; Trincado, J. L.; Romecin, P.; Martinez-Moreno, A.; Takizawa, H.; Shoumariyeh, K.; Renders, S.; Zeiser, R.; Pahl, H. L.; Béliveau, F.; Hébert, J.; Lehnertz, B.; Sauvageau, G.; Menendez, P.; Cabezas-Wallscheid, N.: GPRC5C Drives Branched-Chain Amino Acid Metabolism in Leukemogenesis. Blood Advances Blood advances / American Society of Hematology, bloodadvances.2023010460. (2023)

Castoldi, A.; Sanin, D. E.; van Bakker, N. T.; Aguiar, C. F.; de Monteiro, L. B.; Rana, N.; Grzes, K. M.; Kabat, A. M.; Curtis, J.; Cameron, A. M. et al.; Caputa, G.; de Souza, T. A.; Souto, F. O.; Büscher, J. M.; Edwards-Hicks, J.; Pearce, E. L.; Pearce, E. J.; Camara, N. O. S.: Metabolic and functional remodeling of colonic macrophages in response to high-fat diet-induced obesity. iScience 26, 107719 (2023)

Tsang, T. H.; Wiese, M.; Helmstädter, M.; Stehle, T.; Seyfferth, J.; Shvedunova, M.; Holz, H.; Walz, G.; Akhtar, A.: Transcriptional regulation by the NSL complex enables diversification of IFT functions in ciliated versus nonciliated cells. Science Advances 9, eadh5598 (2023)

Zhang, G.; Swann, J.; Felder, M.; O'Meara, C.; Boehm, T.: Lymphocyte pathway analysis using naturally lymphocyte-deficient fish. European Journal of Immunology, e2350577 (2023)

Seifert, G.; Fagnocchi, L.; Edozie, M.; Herrmann, S.; Baumann, H.; Panzeri, I.; Mewes, S.; Aicher, D.; Runkel, M.; Lässle, C. et al.; Fink, J.; Marjanovic, G.; Fichtner-Feigl, S.; Pospisilik, J. A.: The DECON pilot project investigates predictive markers for successful bariatric surgery. Scientific Reports 13, 13401 (2023)

Lan, C.; Kim, J.; Ulferts, S.; Aprile-Garcia, F.; Weyrauch, S.; Anandamurugan, A.; Grosse, R.; Sawarkar, R.; Reinhardt, A.; Hugel, T.: Quantitative real-time in-cell imaging reveals heterogeneous clusters of proteins prior to condensation. Nature Communications 14, 4831 (2023)

Forde, A. J.; Kolter, J.; Zwicky, P.; Baasch, S.; Lohrmann, F.; Eckert, M.; Gres, V.; Lagies, S.; Gorka, O.; Rambold, A. et al.; Büscher, J. M.; Kammerer, B.; Lachmann, N.; Prinz, M.; Groß, O.; Pearce, E. J.; Becher, B.; Henneke, P.: Metabolic rewiring tunes dermal macrophages in staphylococcal skin infection. Science Immunology 8, eadg3517 (2023)

Winkler, F.; Hipp, A. V.; Ramirez, C.; Martin, B.; Villa, M.; Neuwirt, E.; Gorka, O.; Aerssens, J.; Johansson, S. E.; Rana, N. et al.; Llewellyn-Lacey, S.; Price, D. A.; Panning, M.; Groß, O.; Pearce, E. L.; Hermann, C. M.; Schumann, K.; Hannibal, L.; Neumann-Haefelin, C.; Boettler, T.; Knolle, P.; Hofmann, M.; Wohlleber, D.; Thimme, R.; Bengsch, B.: Enolase represents a metabolic checkpoint controlling the differential exhaustion programmes of hepatitis virus-specific CD8⁺ T cells. Gut 72, pp. 1971 - 1984 (2023)

Swann, J.; Grammer, C.; Schorpp, M.; Boehm, T.: A survey of the adaptive immune genes of the polka-dot batfish Ogcocephalus cubifrons. BMC Immunology 24, 20 (2023)

Kim, M.; Serwa, R. A.; Samluk, L.; Suppanz, I.; Kodroń, A.; Stępkowski, T. M.; Elancheliyan, P.; Tsegaye, B.; Oeljeklaus, S.; Wasilewski, M. et al.; Warscheid, B.; Chacinska, A.: Immunoproteasome-specific subunit PSMB9 induction is required to regulate cellular proteostasis upon mitochondrial dysfunction. Nature Communications 14, 4092 (2023)

Iyer, S. S.; Sun, Y.; Seyfferth, J.; Manjunath, V.; Samata, M.; Alexiadis, A.; Kulkarni, T.; Gutierrez, N.; Georgiev, P.; Shvedunova, M. et al.; Akhtar, A.: The NSL complex is required for piRNA production from telomeric clusters. Life science alliance 6, e202302194 (2023)

Appiah, B.; Fullio, C. L.; Ossola, C.; Bertani, I.; Restelli, E.; Cheffer, A.; Polenghi, M.; Haffner, C.; Garcia-Miralles, M.; Zeis, P. et al.; Treppner, M.; Bovio, P.; Schlichtholz, L.; Mas-Sanchez, A.; Zografidou, L.; Winter, J.; Binder, H.; Grün, D.; Kalebic, N.; Taverna, E.; Vogel, T.: DOT1L activity affects neural stem cell division mode and reduces differentiation and ASNS expression. EMBO Reports, e56233 (2023)

Rosales-Alvarez, R. E.; Rettkowski, J.; Herman, J. S.; Dumbović, G.; Cabezas-Wallscheid, N.; Grün, D.: VarID2 quantifies gene expression noise dynamics and unveils functional heterogeneity of ageing hematopoietic stem cells. Genome Biology: Biology for the Post-Genomic Era 24, 148 (2023)

Giorgetti, O. B.; O'Meara, C. P.; Schorpp, M.; Boehm, T.: Origin and evolutionary malleability of T cell receptor α diversity. Nature 619, pp. 193 - 200 (2023)

Iwanami, N.; Richter, A. S.; Sikora, K.; Boehm, T.: Tnpo3 controls splicing of the pre-mRNA encoding the canonical TCR α chain of iNKT cells. Nature Communications 14, 3645 (2023)