Publications

Journal Article (1262)

  1. 2019
    Journal Article
    Ramisch, A.; Heinrich, V.; Glaser, L. V.; Fuchs, A.; Yang, X.; Benner, P.; Schöpflin, R.; Li, N.; Kinkley, S.; Römer-Hillmann, A. et al.; Longinotto, J.; Heyne, S.; Czepukojc, B.; Kessler, S. M.; Kiemer, A. K.; Cadenas, C.; Arrigoni, L.; Gasparoni, N.; Manke, T.; Pap, T.; Pospisilik, A.; Hengstler, J.; Walter, J.; Meijsing, S. H.; Chung, H.-R.; Vingron, M.: CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome Biology: Biology for the Post-Genomic Era 20, p. 227 (2019)
  2. Journal Article
    Renschler, G.; Richard, G.; Keller Valsecchi, C. I.; Toscano, S.; Arrigoni, L.; Ramírez, F.; Akhtar, A.: Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling. Genes and Development 33, pp. 1591 - 1612 (2019)
  3. Journal Article
    Sankowski, R.; Böttcher, C.; Masuda, T.; Geirsdottir, L.; Sagar, S.; Sindram, E.; Seredenina, T.; Muhs, A.; Scheiwe, C.; Shah, M. J. et al.; Heiland, D. H.; Schnell, O.; Grün, D.; Priller, J.; Prinz, M.: Mapping microglia states in the human brain through the integration of high-dimensional techniques. Nature Neuroscience 22, pp. 2098 - 2110 (2019)
  4. Journal Article
    Sawarkar, R.; Scherz‐Shouval, R.; Denzel, M. S.; Saarikangas, J.: Chaperoning junior faculty: Institutional support and guidance can relieve challenges for early-career group leaders and imporove academic performance. EMBO Reports 20, p. e47163 (2019)
  5. Journal Article
    Sheikh, B.; Akhtar, A.: Many lives of KATs - detector, integrator and modulator of cellular environment. Nature Reviews Genetics 20, pp. 7 - 23 (2019)
  6. Journal Article
    Sheikh, B.; Guhathakurta, S.; Akhtar, A.: The non-specific lethal (NSL) complex at the crossroads of transcriptional control and cellular homeostasis. EMBO Reports, p. e47360 (2019)
  7. Journal Article
    Sommerkamp, P.; Renders, S.; Ladel, L.; Hotz-Wagenblatt, A.; Schönberger, K.; Zeisberger, P.; Przybylla, A.; Sohn, M.; Zhou, Y.; Klibanski, A. et al.; Cabezas-Wallscheid, N.; Trumpp, A.: The long non-coding RNA Meg3 is dispensable for hematopoietic stem cells. Scientific Reports 9, p. 2110 (2019)
  8. Journal Article
    Volpe, G.; Cauchy, P.; Walton, D. S.; Ward, C.; Blakemore, D.; Bayley, R.; Clarke, M. L.; Schmidt, L.; Nerlov, C.; Garcia, P. et al.; Dumon, S.; Grebien, F.: Dependence on Myb expression is attenuated in myeloid leukaemia with N-terminal CEBPA mutations. Life Science Alliance 2, p. e201800207 (2019)
  9. 2018
    Journal Article
    Sanin, D. E.; Matsushita, M.; Klein-Geltink, R.; Grzes, K.; van Bakker, N. T.; Corrado, M.; Kabat, A.; Buck, M. D.; Qiu, J.; Lawless, S. J. et al.; Cameron, A.; Villa, M.; Baixauli Celda, F.; Patterson, A. E.; Hässler, F.; Curtis, J. D.; O’Neill, C. M.; O'Sullivan, D.; Wu, D.; Mittler, G.; Huang, S. C.-C.; Pearce, E. L.; Pearce, E. J.: Mitochondrial Membrane Potential Regulates Nuclear Gene Expression Macrophages Exposed to Prostaglandin. Immunity 49, pp. 1021 - 1033 (2018)
  10. Journal Article
    Edginton-White, B.; Cauchy, P.; Assi, S. A.; Hartmann, S.; Mathas, S.; Cockerill, P. N.; Bonifer, C.: Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphoma. Leukemia: the Journal of Normal and Malignant Hemopoiese ; Official Journal of the Leukemia Research Fund U.K. (2018)
  11. Journal Article
    Gahr, C. L.; Boehm, T.; Milinski, M.: Female assortative mate choice functionally validates synthesized male odours of evolving stickleback river–lake ecotypes. Biology Letters 14 (12), 20180730 (2018)
  12. Journal Article
    Skortsova, K.; Iovino, N.; Bogdanovic, O.: Functions and mechanisms of epigenetic inheritance in animals. Nature Reviews Molecular Cell Biology 19, pp. 774 - 790 (2018)
  13. Journal Article
    Cortes-Selva, D.; Elvington, A. F.; Ready, A.; Rajwa, B.; Pearce, E. J.; Randolph, G. J.; Fairfax, K. C.: Schistosoma mansoni Infection-Induced Transcriptional Changes in Hepatic Macrophage Metabolism Correlate With an Athero-Protective Phenotype. Frontiers in immunology 9, p. 2580 (2018)
  14. Journal Article
    Tinterri, A.; Menardy, F.; Diana, M. A.; Lokmane, L.; Keita, M.; Coulpier, F.; Lemoine, S.; Mailhes, C.; Mathieu, B.; Merchan-Sala, P. et al.; Campbell, K.; Gyory, I.; Grosschedl, R.; Popa, D.; Garel, S.: Active intermixing of indirect and direct neurons builds the striatal mosaic. Nature Communications 9, p. 4725 (2018)
  15. Journal Article
    de Pater, E.; Trompouki, E.: Bloody Zebrafish: Novel methods in Normal and Malignant Hematopoiesis. Frontiers in Cell Development and Biology 6, p. 124 (2018)
  16. Journal Article
    Timper, K.; Paeger, L.; Sánchez-Lasheras, C.; Varela, L.; Jais, A.; Nolte, H.; Vogt, M. C.; Hausen, C.; Heilinger, C.; Evers, N. et al.; Pospisilik, J. A.; Penninger, J. M.; Taylor, E. B.; Horvath, T. L.; Kloppenburg, P.; Brüning, J. C.: Mild Impairment of Mitochondrial OXPHOS Promotes Fatty Acid Utilization in POMC Neurons and Improves Glucose Homeostasis in Obesity. Cell Reports 25, pp. 383 - 397 (2018)
  17. Journal Article
    Basilicata, M. F.; Bruel, A.-L.; Semplicio, G.; Keller Valsecchi, C. I.; Aktaş, T.; Duffourd, Y.; Rumpf, T.; Morton, J.; Bache, I.; Szymanski, W. G. et al.; Gilissen, C.; Vanakker, O.; Õunap, K.; Mittler, G.; van der Burgt, I.; Chehadeh, S. E.; Cho, M. T.; Pfundt, R.; Tan, T. Y.; Kirchhoff, M.; Menten, B.; Vergult, S.; Lindstrom, K.; Reis, A.; Johnson, D. S.; Fryer, A.; McKay, V.; Study, D.; Fisher, R. B.; Thauvin-Robinet, C.; Francis, D.; Roscioli, T.; Pajusalu, S.; Radtke, K.; Ganesh, J.; Brunner, H. G.; Wilson, M.; Faivre, L.; Kalscheuer, V. M.; Thevenon , J.; Akhtar, A.: De novo mutations in MSL3 cause an X-linked syndrome marked by impaired histone H4 lysine 16 acetylation. Nature Genetics, pp. 1442 - 1451 (2018)
  18. Journal Article
    Florian, M. C.; Klose, M.; Sacma, M.; Jablanovic, J.; Knudson, L.; Nattamai, K. J.; Marka, G.; Vollmer, A.; Soller, K.; Sakk, V. et al.; Cabezas-Wallscheid, N.; Zheng, Y.; Mulaw, M. A.; Glauche, I.; Geiger, H.: Aging alters the epigenetic asymmetry of HSC division. PLoS Biology 16, p. e2003389 (2018)
  19. Journal Article
    Jevtic, V.; Kindle, P.; Avilov, S.: SYBR Gold dye enables preferential labelling of mitochondrial nucleoids and their time lapse imaging by structures illumination microscopy. PLoS One 13, p. E0203956 (2018)
  20. Journal Article
    Woopen, C.; Straub, T.; Schweier, O.; Aichele, U.; Düker, K.; Boehm, T.; Pircher, H.: Immunological tolerance to LCMV antigens differently affects control of acute and chronic virus infection in mice. European Journal of Immunology 48, pp. 120 - 127 (2018)
  21. Journal Article
    Ward, C.; Volpe, G.; Cauchy, P.; Ptasinska, A.; Almaghrabi, R.; Blakemore, D.; Nafria, M.; Kestner, D.; Frampton, J.; Murphy, G. et al.; Buganim, Y.; Kaji, K.; García, P.: Fine-Tuning Mybl2 is Required for Proper Mesenchymal-to-Epithelial Transition during somatic Reprogramming. Cell Reports 24, pp. 1496 - 1511 (2018)
  22. Journal Article
    Roovers, E. F.; Kaaij, L. J.T.; Redl, S.; Bronkhorst, A. W.; Wiebrands, K.; de Domingues, A. M. J.; Huang, H.-Y.; Han, C.-T.; Riemer, S.; Dosch, R. et al.; Salvenmoser, W.; Grün, D.; Butter, F.; van Oudenaarden, A.; Ketting, R. F.: Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification. Developmental Cell 46, pp. 285 - 301 (2018)
  23. Journal Article
    Giladi, A.; Paul, F.; Herzog, Y.; Lubling, Y.; Weiner, A.; Yofe, I.; Jaitin, D.; Cabezas-Wallscheid, N.; Dress, R.; Ginhoux, F. et al.; Trumpp, A.; Tanay, A.; Amit, I.: Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis. Nature Cell Biology 20, pp. 836 - 846 (2018)
  24. Journal Article
    Wolff, J.; Bhardwaj, V.; Nothjunge, S.; Richard, G.; Renschler, G.; Gilsbach, R.; Manke, T.; Backofen, R.; Ramirez, F.; Grüning, B. A.: Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. Nucleic Acids Research (London) 46, pp. W11 - W16 (2018)
  25. Journal Article
    Ramos Pittol, J. M.; Oruba, A.; Mittler, G.; Saccani , S.; van Essen, D.: Zbrv7a is a transducer for the control of promoter accessibility by NF-kappa B and multiple other transcription factors. PLoS Biology 16, p. e2004526 (2018)
  26. Journal Article
    Yanai, H.; Chiba, S.; Hangai, S.; Kometani, K.; Inoue, A.; Kimura, Y.; Abe, T.; Kiyonari, H.; Nishio, J.; Taguchi-Atarashi, N. et al.; Mizushima, Y.; Negishi, H.; Grosschedl, R.; Taniguchi, T.: Revisiting the role of IRF3 in inflammation and immunity by conditional and specifically targeted gene ablation in mice. Proceedings of the National Academy of Sciences of the United States of America 115, pp. 5253 - 5258 (2018)
  27. Journal Article
    Rosa, F.; Rameil, P.; Algarté-Génin, M.; Bedotto, M.; Ferrier , P.; Cauchy, P.; Imbert, J.: Identification of Two Novel Regulatory Elements in the IL2RA Gene Locus. Journal of Pulmonary & Respiratory Medicine 8, p. 1000458 (2018)
  28. Journal Article
    Herman, J. S.; Sagar, S.; Grün, D.: FateID infers fate bias in multipotent progenitors from single-cell RNA-seq data. Nature methods 15, pp. 379 - 386 (2018)
  29. Journal Article
    Matsushita, M.; Pearce, E. J.: Distrupting metabolism to treat autoimmunity. Science 360, pp. 377 - 378 (2018)
  30. Journal Article
    Matushita, M.; Pearce, E. J.: Disrupting metabolism to treat autoimmunity: Dimethyl fumarate, a treatment ofr multiple sclerosis, inhibits Warburg metabolism. Science 360, pp. 377 - 378 (2018)
 
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