Publications

Max Planck Institute of Immunobiology and Epigenetics

Journal Article (1594)

2014

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Bulut-Karslioglu, A.; De la Rosa-Velazquez, I. A.; Ramirez, F.; Barenboim, M.; Onishi-Seebacher, M.; Arand, J.; Galán, C.; Winter, G. E.; Engist, B.; Gerle, B. et al.; O'Sullivan, R. J.; Martens, J. H. A.; Walter, J.; Manke, T.; Lachner, M.; Jenuwein, T.: Suv39h-Dependent H3K9me3 Marks Intact Retrotransposons and Silences LINE Elements in Mouse Embryonic Stem Cells. Molecular Cell 55, pp. 277 - 290 (2014)

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O'Sullivan, D.; van der Windt, G. J.W.; Huang, S. C.-C.; Curtis , J.; Chang, C.-H.; Buck, M. D.; Qiu, J.; Smith, A. M.; Lam, W. Y.; DiPlato, L. M. et al.; Hsu, F.-F.; Birnbaum, M. J.; Pearce, E. J.; Pearce, E. L.: Memory CD8⁺ T cells use cell-intrinsic lipolysis to support the metabolic programming necessary for development. Immunity 41, pp. 75 - 88 (2014)

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Jais, A.; Einwallner, E.; Sharif, O.; Gossens, K.; Tsai-Hsiu Lu, T.; Soyal, S. M.; Medgyesi, D.; Neureiter, D.; Paier-Pourani, J.; Dalgaard, K. et al.; Duvigneau, J. C.; Lindroos-Christensen, J.; Zapf, T.-C.; Amann, S.; Saluzzo, S.; Jantscher, F.; Stiedl, P.; Todoric, J.; Martins, R.; Oberkofler, H.; Müller, S.; Hauser-Kronberger, C.; Kenner, L.; Casanova, E.; Sutterlüty-Fall, H.; Bilban, M.; Miller, K.; Kozlov, A. V.; Krempler, F.; Knapp, S.; Lumeng, C. N.; Patsch, W.; Wagner, O.; Pospisilik, J. A.; Esterbauer, H.: Heme Oxygenase-1 Drives Metaflammation and Insulin Resistance in Mouse and Man. Cell 158, pp. 25 - 40 (2014)

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Baracho, G. V.; Cato, M. H.; Zhu, Z.; Jaren, O. R.; Hobeika, E.; Reth, M.; Rickert, R. C.: PDK1 regulates B cell differentiation and homeostasis. Proceedings of the National Academy of Sciences, USA, pp. 9573 - 9578 (2014)

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Rosenbaum, M.; Andreani, V.; Kapoor, T.; Herp, S.; Flach, H.; Duchniewicz, M.; Grosschedl, R.: MZB1 is a GRP94 cochaperone that enables proper immunoglobulin heavy chain biosynthesis upon ER stress. Genes and Development 28, pp. 1165 - 1178 (2014)

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Venkatesh, B.; Lee, A. P.; Ravi, V.; Maurya, A. K.; Korzh, V.; Lim, Z. W.; Ingham, P. W.; Boehm, T.; Brenner, S.; Warren, W. C.: On the Origin of SCPP genes. Evolution and Development 16, pp. 125 - 126 (2014)

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Backofen, R.; Amman, F.; Costa, F.; Findeiß, S.; Richter, A. S.; Stadler, P. F.: Bioinformatics of prokaryotic RNAs. RNA Biology 11, pp. 470 - 483 (2014)

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Iovino, N.: Drosophila epigenome reorganization during oocyte differentiation and early embryogenesis. Briefings in Functional Genomics 13, pp. 246 - 253 (2014)

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Everts, B.; Amiel, E.; Huang, S. C.-C.; Smith, A. M.; Chang, C.-H.; Lam, W. Y.; Redmann, V.; Freitas, T. C.; Blagih, J.; van der Windt, G. J. W. et al.; Artyomov, M. N.; Jones, R. G.; Pearce, E. L.; Pearce, E. J.: TLR-driven early glycolytic reprogramming via the kinases TBK1-IKKɛ supports the anabolic demands of dendritic cell activation. Nature Immunology 15, pp. 323 - 332 (2014)

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Honda, T.; Egen, J. G.; Lämmermann, T.; Kastenmüller, W.; Torabi-Parizi, P.; Germain, R. N.: Tuning of antigen sensitivity by T cell receptor-dependent negative feedback controls T cell effector function inflammed tissues. Immunity 40, pp. 235 - 247 (2014)

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Albert, T. K.; Rigault, C.; Eickhoff, J.; Baumgart, K.; Antrecht, C.; Klebl, B.; Mittler, G.; Meisterernst, M.: Characterization of molecular and cellular functions of the cyclin-dependent kinase CDK9 using a novel specific inhibitor. British Journal of Pharmacology 171, pp. 55 - 68 (2014)

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Alsadeq, A.; Hobeika, E.; Medgyesi, D.; Kläsener, K.; Reth, M.: The Role of the Syk/Shp-1 Kinase-Phosphatase Equilibrium in B Cell Development and Signaling. The Journal of Immunology 193, pp. 268 - 276 (2014)

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Bassett, A. R.; Akhtar, A.; Barlow, D. P.; Bird, A. P.; Brockdorff, N.; Duboule, D.; Ephrussi, A.; Ferguson-Smith, A. C.; Gingeras, T. R.; Haerty, W. et al.; Higgs, D. R.; Miska, E. A.; Ponting, C. P.: Considerations when investigating IncRNA function in vivo. eLife 3, e03058 (2014)

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Biterge, B.; Richter, F.; Mittler, G.; Schneider, R.: Methylation of histone H4 at aspartate 24 by Protein L-isoaspartate O-methyltransferase (PCMT1) links histone modification with protein homeostasis. Scientific Reports 4, p. 6674 - 6674 (2014)

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Boehm, T.; Swann, J.: Origin and Evolution of Adaptive Immunity. Annual Review of Animal BioScience 2, pp. 259 - 283 (2014)

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Braeutigam, C.; Rago, L.; Rolke, A.; Waldmeier, L.; Christofori, G.; Winter, J.: The RNA-binding protein Rbfox2: an essential regulator of EMT-driven alternative splicing and a mediator of cellular invasion. Oncogene 33, pp. 1082 - 1092 (2014)

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Braeutigam, C.; Rago, L.; Rolke, A.; Waldmeier, L.; Christofori, G.; Winter, J.: The RNA-binding protein Rbfox2: an essential regulator of EMT-driven alternative splicing and a mediator of cellular invasion. Oncogene 33, pp. 1082 - 1092 (2014)

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Cabezas-Wallscheid, N.; Klimmeck, D.; Hansson, J.; Lipka, D. B.; Reyes, A.; Wang, Q.; Weichenhan, D.; Lier, A.; von Paleske, L.; Renders, S. et al.; Wünsche, P.; Zeisberger, P.; Brocks, D.; Gu, L.; Herrmann, C.; Haas, S.; Essers, M. A.G.; Brors, B.; Trumpp, A.: Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis. Cell Stem Cell 15, pp. 507 - 522 (2014)

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Carnevalli, L. S.; Scognamiglio, R.; Cabezas-Wallscheid, N.; Rahmig, S.; Laurenti, E.; Masuda, K.; Jöckel, L.; Kuck, A.; Sujer, S.; Polykratis, A. et al.; Erlacher, M.; Pasparakis, M.; Essers, M. A.G.; Trumpp, A.: Improved HSC reconstitution and protection from inflammatory stress and chemotherapy in mice lacking Granzyme B. Journal of Experimental Medicine 211, pp. 769 - 779 (2014)

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Chelmicki, T.; Dündar, F.; Turley, M. J.; Khanam, T.; Aktas, T.; Ramírez, F.; Gendrel, A.-V.; Wright, P. R.; Videm, P.; Backofen, R. et al.; Heard, E.; Manke, T.; Akhtar, A.: MOF-associated complexes ensure stem cell identity and Xist repression. eLife 3, p. e02024 (2014)

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Di Cerbo, V.; Mohn, F.; Ryan, D. P.; Montellier, E.; Kacem, S.; Tropberger, P.; Kallis, E.; Holzner, M.; Hoerner, L.; Feldmann, A. et al.; Richter, F. M.; Bannister, A. J.; Mittler, G.; Michaelis, J.; Khochbin, S.; Feil, R.; Schuebeler, D.; Owen-Hughes, T.; Daujat, S.; Schneider, R.: Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription. eLife 3, pp. 1 - 23 (2014)

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Dias, J.; Van Nguyen, N.; Georgiev, P.; Gaub, A.; Brettschneider, J.; Cusack, S.; Kadlec, J.; Akhtar, A.: Structural analysis of the KANSL1/WDR5/KANSL2 complex reveals that WDR5 is required for efficient assembly and chromatin targeting of the NSL complex. Genes and Development 28, pp. 929 - 942 (2014)

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Engelke, R.; Riede, J.; Hegermann, J.; Wuerch, A.; Eimer, S.; Dengjel, J.; Mitler, G.: The Quantitative Nuclear Matrix Proteome as a Biochemical Snapshot of Nuclear Organization. Journal of Proteome Research 13, pp. 3940 - 3956 (2014)

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Everts, B.; Pearce, E. J.: Metabolic Control of Dendritic Cell Activation and Function: Recent Advances and Clinical Implications. Frontiers in immunology 5, p. 203 (2014)

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Friedensohn, S.; Sawarkar, R.: Cis-regulatory variation: significance in biomedicine and evolution. Cell and Tissue Research 356, pp. 495 - 505 (2014)

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Gautier, E. L.; Ivanov, S.; Williams, J. W.; Huang, S. C.-C.; Marcelin, G.; Fairfax, K.; Wang, P. L.; Francis, J. S.; Leone, P.; Wilson, D. B. et al.; Artyomov, M. N.; Pearce, E. J.; Randolph, G. J.: Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival. Journal of Experimental Medicine 211, pp. 1525 - 1531 (2014)

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Gilsbach, R.; Preissl, S.; Grüning, B. A.; Schnick, T.; Burger, L.; Benes, V.; Würch, A.; Bönisch, U.; Günther, S.; Backofen, R. et al.; Fleischmann, B. K.; Schübeler, D.; Hein, L.: Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease. Nature Communications 5, pp. 1 - 13 (2014)

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Grosschedl, R.: Establishment and Maintenance of B cell Identity. Cold Spring Harbor Symposia on Quantitative Biology 78, pp. 23 - 30 (2014)

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Grötsch, B.; Brachs, S.; Lang, C.; Luther, J.; Derer, A.; Schlötzer-Schrehardt, U.; Bozec, A.; Fillatreau, S.; Berberich, I.; Hobeika, E. et al.; Reth, M.; Wagner, E. F.; Schett, G.; Mielenz, D.; David, J.-P.: The AP-1 transcription factor Fra1 ihhibits follicular B cell differentiation into plasma cells. The Journal of Experimental Medicine 211, pp. 2199 - 2212 (2014)

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Grün, D.; Kester, L.; van Oudenaarden, &. A.: Validation of noise models for single-cell transcriptomics enables genome-wiede quentification of stochastic gene expression. Nature methods 11, pp. 637 - 640 (2014)

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