Publications

2014

Journal Article

Grün, D.; Kirchner, M.; Thierfelder, N.; Stoeckius, M.; Selbach, M.; Rajewsky, N.: Conservation of mRNA and protein expression during development of C.elegans. Cell Reports 6, pp. 565 - 577 (2014)

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Hug, E.; Hobeika, E.; Reth, M.; Jumaa, H.: Inducible expression of hyperactive Syk in B cells activates Blimp-1-dependent terminal differentiation. Oncogene 33, pp. 3730 - 3741 (2014)

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Journal Article

Hutzler, S.; Özgör, L.; Naito-Matsui, Y.; Kläsener, K.; Winkler, T. H.; Reth, M.; Nitschke, L.: The Ligand-Binding Domain of Siglec-G Is Crucial for Its Selective Inhibitory Function on B1 Cells. The Journal of Immunology 192, pp. 5406 - 5414 (2014)

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Klasen, C.; Ohl, K.; Sternkopf, M.; Shachar, I.; Schmitz, C.; Heussen, N.; Hobeika, E.; Levit-Zerdoun, E.; Tenbrock, K.; Reth, M. et al.; Bernhagen, J.; El Bounkari, O.: MIF Promotes B Cell Chemotaxis through the Receptors CXCR4 and CD74 and ZAP-70 Signaling. The Journal of Immunology 192, pp. 5273 - 5284 (2014)

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Kläsener, K.; Maity, P. C.; Hobeika, E.; Yang, J.; Reth, M.: B cell activation involves nanoscale receptor reorganizations and inside-out signaling by Syk. eLife 3, pp. 1 - 17 (2014)

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Klimmeck, D.; Cabezas-Wallscheid, N.; Reyes, A.; von Paleske, L.; Renders, S.; Hansson, J.; Krijgsveld, J.; Huber, W.; Trumpp, A.: Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment. Stem Cell Reports 11, pp. 858 - 875 (2014)

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publisher-version

Journal Article

Königsberger, S.; Weis, V.; Prodöhl, J.; Stehling, M.; Hobeika, E.; Reth, M.; Kiefer, F.: Suboptimal B-cell antigen receptor signaling activity in vivo elicits germinal center counterselection mechanisms. European Journal of Immunology 45, pp. 603 - 611 (2014)

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Krönig, M.; Walter, M.; Drendel, V.; Werner, M.; Jilg, C. A.; Richter, A. S.; Backofen, R.; McGarry, D.; Follo, M.; Schultze-Seemann, W. et al.; Schüle, R.: Cell type specific gene expression analysis of prostate needle biopsies resolves tumor tissue heterogeneity. Oncotarget 6, pp. 1302 - 1314 (2014)

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Lämmermann, T.; Germain, R. N.: The multiple faces of leukocyte interstitial migration. Springer Seminars in Immunopathology 36, pp. 227 - 251 (2014)

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Lindner, J. M.; Kayo, H.; Hedlund, S.; Fukuda, Y.; Fukao, T.; Nielsen, P. J.: Cutting Edge: The Transcription Factor Bob1 Counteracts B Cell Activation and Regulates miR-146a in B cells. The Journal of Immunology 192, pp. 4483 - 4486 (2014)

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Lipka, D. B.; Wang, Q.; Cabezas-Wallscheid, N.; Klimmeck, D.; Weichenhan, D.; Herrmann, C.; Lier, A.; Brocks, D.; von Paleske, L.; Renders, S. et al.; Wünsche, P.; Zeisberger, P.; Gu, L.; Haas, S.; Essers, M. A.; Brors, B.; Eils, R.; Trumpp, A.; Milsom , M. D.; Plass, C.: Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing. Cell Cycle 13, pp. 3476 - 3487 (2014)

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Maity, P. C.; Yang, J.; Klaesener, K.; Reth, M.: The nanoscale organization of the B lymphocyte membrane. Biochemica et Biophiysica Acta 1853, pp. 830 - 840 (2014)

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Medgyesi, D.; Hobeika, E.; Biesen, R.; Kollert, F.; Taddeo, A.; Voll, R. E.; Hiepe, F.; Reth, M.: The protein tyrosine phsphatase PTP1B is a negative regulator of CD40 and BAFF-R signaling and controls B cell autoimmunity. Journal of Experimental Medicine 211, pp. 427 - 440 (2014)

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Journal Article

Medgyesi, D.; Hobeika, E.; Biesen, R.; Kollert, F.; Taddeo, A.; Voll, R. E.; Hiepe, F.; Reth, M.: The protein tyrosine phosphatase PTP1B is a negative regulator of CD40 and BAFF-R signaling an controls B cell autoimmunity. The Journal of Experimental Medicine 211, pp. 427 - 440 (2014)

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Nascimento, M.; Huang, S. C.; Smith, A.; Everts, B.; Lam, W.; Bassity, E.; Gautier, E. L.; Randolph, G. J.; Pearce, E. J.: Ly6C^hi Monocyte Recruitment is Responsible for Th2 Associated Host-Protective Maxrophage Accumulation in Liver Inflammation due to Schistosomiasis. PLoS Pathogens 10, p. e1004282 (2014)

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Okosun, J.; Bödör, C.; Wang, J.; Araf, S.; Yang, C.-Y.; Pan, C.; Boller, S.; Cittaro, D.; Bozek, M.; Iqbal, S. et al.; Matthews, J.; Wrench, D.; Marzec, J.; Tawana, K.; Popov, N.; O'riain, C.; O'Shea, D.; Carlotti, E.; Davies, A.; Lawrie, C. H.; Matolcsy, A.; Calaminici, M.; Norton, A.; Byers, R. J.; Mein, C.; Stupka, E.; Lister, T. A.; Lenz, G.; Montoto, S.; Gribben, J. G.; Fan, Y.; Grosschedl, R.; Chelala, C.; Fitzgibbon, J.: Integrated genomic analysis identifies recurrent mutations and evolution patterns driving the initiation and progression of follicular lymphoma. Nature Genetics 46, pp. 176 - 181 (2014)

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Quinn, J. J.; Ilik, I. A.; Qu, K.; Georgiev, P.; Chu, C.; Akhtar, A.; Chang, H. Y.: Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification. Nature biotechnology 32, pp. 933 - 940 (2014)

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Journal Article

Ramírez, F.; Dündar, F.; Diehl, S.; Grüning, B. A.; Manke, T.: deep Tools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Research 42, pp. W187 - W191 (2014)

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Journal Article

Reese, T.A.; Wakeman, B.S.; Choi, H.S.; Hufford, M.M.; Huang, S.C.; Zhang, X.; Buck, M.D.; Jezewski, A.; Kambal, A.; Liu, C.Y. et al.; Goel, G.; Murray, P.J.; Xavier, R.J.; Kaplan, M.H.; Renne, R.; Speck, S.H.; Artyomov, M.N.; Pearce, E. J.; Virgin, H.W.: Helminth Infection Reactivates Latent γ-herpesvirus Via Cytokine Competition at a Viral Promoter. Science 345, pp. 573 - 577 (2014)

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Reth, M.: Antigen Receptors Tail Clue. The Journal of Immunology 192, pp. 4015 - 4016 (2014)

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Reth, M.; Nielsen, P.: Signaling Circuits in Early B-Cell Development. Advances in Immunology 122, pp. 129 - 175 (2014)

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Sané, S.; Heilemann, C.; Salavei, P.; Rubenwolf, S.; Jolivalt, C.; Madzak, C.; Zengerle, R.; Nielsen, P. J.; Kerzenmacher, S.: Enzymatic Fuel Cells Solely Supplied with Unpurified Cellbiose Dehydrogenase and Laccase in Microorganism's Culture Supernatants. Chemelectrochem 1, pp. 1886 - 1894 (2014)

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Journal Article

Stoeckius, M.; Grün, D.; Kirchner, M.; Ayoub, S.; Torti, F.; Piano, F.; Herzog, M.; Selbach, M.; Rajewsky, N.: Global characterization of the oocyte‐to‐embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO Journal 33, pp. 1751 - 1766 (2014)

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Journal Article

Stoeckius, M.; Grün, D.; Rajewsky, N.: Paternal RNA contributions of C.elegans zygote. EMBO Journal 33, pp. 1740 - 1750 (2014)

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Journal Article

Tat Trung, N.; Engelke, R.; Mittler, G.: SILAC-Based Quantitative Proteomics Approach to Identify Transcription Factors Interacting with a Novel Cis-Regulatory Element. Proteomics & Bioinformatics 7, pp. 082 - 087 (2014)

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Teperino, R.; Aberger, F.; Esterbauer, H.; Riobo, N.; Pospisilik, J. A.: Canonical and non-canonical Hedgehog signalling and the control of metabolism. Seminars in Cell & Developmental Biology 33, pp. 81 - 92 (2014)

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Trompouki, E.; King, K. Y.; Will, B.; Lessard, J.; Flores-Figueroa, E.; Kokkaliaris, K. D.; Bowman, T.: Blood signals: from birth to disease and death. Experimental Hematology 42, pp. 989 - 994 (2014)

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publisher-version

Journal Article

Umiker, B. R.; McDonald, G.; Larbi, A.; Medina, C. O.; Hobeika, E.; Reth, M.; Imanishi-Kari, T.: Production of IgG autoantibody requires expression of activation-induced deaminase in early-developing B cells in a mouse model of SLE. European Journal of Immunology 44, pp. 3093 - 3108 (2014)

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Venkatesh, B.; Lee, A. P.; Ravi, V.; Maurya, A. K.; Lian, M. M.; Swann, J. B.; Ohta, Y.; Flajnik, M. F.; Sutoh, Y.; Kasahara, M. et al.; Hoon, S.; Gangu, V.; Roy, S. W.; Irimia, M.; Korzh, V.; Kondrychyn, I.; Lim, Z. W.; Tay, B.-H.; Tohari, S.; Kong, K. W.; Ho, S.; Lorente-Galdos, B.; Quilez, J.; Marques-Bonet, T.; Raney, B. J.; Ingham, P. W.; Tay, A.; Hillier, L. W.; Minx, P.; Boehm, T.; Wilson, R. K.; Brenner, S.; Warren, W. C.: Elephant shark genome provides unique insights into gnathostome evolution. Nature 505, pp. 174 - 179 (2014)

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Wright, P. R.; Georg, J.; Mann, M.; Sorescu, D. A.; Richter, A. S.; Lott, S.; Kleinkauf, R.; Hess, W. R.; Backofen, R.: CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains. Nucleic Acids Research 42, pp. W119 - W123 (2014)

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Journal Article (1594)